Difference between revisions of "Aperio slide scanner software"

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'''Scanscope''' is software used to scan images.
This article deals with the '''Aperio slide scanner software'''.


Steps:
==Scanscope==
# Open "Console" program
This software used to scan the images.
# Load slide (label to left).
# Right click "Replace slide"
# Right click "Get snapshot"


Select area:
===One slide===
* Right click "Review snapshot"
#Place slide with label closest to front of slide scanner.
#Open ''ScanScope''.
#*Click ''Manual load'' or ''One Touch''


Start scanning:
''Manual scan'':
* "One Touch"
*''Scan area'' tab: select area to be scanned (green box).
*''Focus Points'' tab: ''Autoselect'' will usually do.
**Focus points can be added with left mouse button double clicks.
**Focus points over blue stained areas tend to do better than over light pink stained areas.
*''Calibrate'' tab: should be boring grey.
*''Scan'' tab: click ''Start Scan'' and it should do it.
 
===Several slides===
Getting started:
# Load cartridge - tissue toward inside of the scanner.
#* Push until it clicks.
# Open ''ScanScope Console''.
#* Enter user and password.
## Goto ''Start'' tab.
##* Dark gray rectangles = selected slides.
## Select slides.
##* Right click - select ''Get snapshots''.
 
===Notes===
Other:
*''Find tissue'' - automagically draws green box around the tissue.
 
Preview:
*Green box = area scanned.
*Yellow boxes = focus points.
*Blue = white balance reference point.
 
Rack display:
*Hatched blue lines = scanning of slide in progress.
*Solid blue = slide was scanned.
 
==ImageScope==
*This software is used to view the images generated by ''Scanscope''.
 
Note:
*Digital slides are stored in a central repository ( http://eh-aperio/List.php ).
 
Navigation:
*Most recently scanned: ''Digital Slides'' -> ''All Digital Slides (As List)''.
 
==Aperio web server==
*Used to view slides with a web browser.<ref name=pmid18673512>{{Cite journal  | last1 = Rojo | first1 = MG. | last2 = Gallardo | first2 = AJ. | last3 = González | first3 = L. | last4 = Peces | first4 = C. | last5 = Murillo | first5 = C. | last6 = González | first6 = J. | last7 = Sacristán | first7 = J. | title = Reading virtual slide using web viewers: results of subjective experience with three different solutions. | journal = Diagn Pathol | volume = 3 Suppl 1 | issue =  | pages = S23 | month =  | year = 2008 | doi = 10.1186/1746-1596-3-S1-S23 | PMID = 18673512 | PMC = 2500104 | URL = http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2500104/ }}</ref>
 
==See also==
*[[Informatics]].
 
==References==
{{Reflist|1}}
 
==External links==
*[http://www.aperio.com/sites/default/files/events/042711_Tips_and_Tricks_Ole_Eichhorn.pdf Scanning tips and tricks (aperio.com)].


[[Category:Informatics]]
[[Category:Informatics]]

Latest revision as of 14:12, 5 August 2013

This article deals with the Aperio slide scanner software.

Scanscope

This software used to scan the images.

One slide

  1. Place slide with label closest to front of slide scanner.
  2. Open ScanScope.
    • Click Manual load or One Touch

Manual scan:

  • Scan area tab: select area to be scanned (green box).
  • Focus Points tab: Autoselect will usually do.
    • Focus points can be added with left mouse button double clicks.
    • Focus points over blue stained areas tend to do better than over light pink stained areas.
  • Calibrate tab: should be boring grey.
  • Scan tab: click Start Scan and it should do it.

Several slides

Getting started:

  1. Load cartridge - tissue toward inside of the scanner.
    • Push until it clicks.
  2. Open ScanScope Console.
    • Enter user and password.
    1. Goto Start tab.
      • Dark gray rectangles = selected slides.
    2. Select slides.
      • Right click - select Get snapshots.

Notes

Other:

  • Find tissue - automagically draws green box around the tissue.

Preview:

  • Green box = area scanned.
  • Yellow boxes = focus points.
  • Blue = white balance reference point.

Rack display:

  • Hatched blue lines = scanning of slide in progress.
  • Solid blue = slide was scanned.

ImageScope

  • This software is used to view the images generated by Scanscope.

Note:

Navigation:

  • Most recently scanned: Digital Slides -> All Digital Slides (As List).

Aperio web server

  • Used to view slides with a web browser.[1]

See also

References

  1. ↑ Rojo, MG.; Gallardo, AJ.; González, L.; Peces, C.; Murillo, C.; González, J.; Sacristán, J. (2008). "Reading virtual slide using web viewers: results of subjective experience with three different solutions.". Diagn Pathol 3 Suppl 1: S23. doi:10.1186/1746-1596-3-S1-S23. PMC 2500104. PMID 18673512. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2500104/.

External links

Retrieved from "https://librepathology.org/w/index.php?title=Aperio_slide_scanner_software&oldid=23607"