Difference between revisions of "Aperio slide scanner software"
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This software used to scan the images. | This software used to scan the images. | ||
===One slide=== | |||
# | #Place slide with label closest to front of slide scanner. | ||
#Open ''ScanScope''. | |||
# | #*Click ''Manual load'' or ''One Touch'' | ||
# | |||
''Manual scan'': | |||
* | *''Scan area'' tab: select area to be scanned (green box). | ||
*''Focus Points'' tab: ''Autoselect'' will usually do. | |||
**Focus points can be added with left mouse button double clicks. | |||
**Focus points over blue stained areas tend to do better than over light pink stained areas. | |||
*''Calibrate'' tab: should be boring grey. | |||
*''Scan'' tab: click ''Start Scan'' and it should do it. | |||
Start scanning | ===Several slides=== | ||
* | Getting started: | ||
# Load cartridge - tissue toward inside of the scanner. | |||
#* Push until it clicks. | |||
# Open ''ScanScope Console''. | |||
#* Enter user and password. | |||
## Goto ''Start'' tab. | |||
##* Dark gray rectangles = selected slides. | |||
## Select slides. | |||
##* Right click - select ''Get snapshots''. | |||
===Notes=== | |||
Other: | |||
*''Find tissue'' - automagically draws green box around the tissue. | |||
Preview: | |||
*Green box = area scanned. | |||
*Yellow boxes = focus points. | |||
*Blue = white balance reference point. | |||
Rack display: | |||
*Hatched blue lines = scanning of slide in progress. | |||
*Solid blue = slide was scanned. | |||
==ImageScope== | ==ImageScope== | ||
| Line 21: | Line 46: | ||
Note: | Note: | ||
*Digital slides are stored in a central repository ( http://eh-aperio/List.php ). | *Digital slides are stored in a central repository ( http://eh-aperio/List.php ). | ||
Navigation: | |||
*Most recently scanned: ''Digital Slides'' -> ''All Digital Slides (As List)''. | |||
==Aperio web server== | |||
*Used to view slides with a web browser.<ref name=pmid18673512>{{Cite journal | last1 = Rojo | first1 = MG. | last2 = Gallardo | first2 = AJ. | last3 = González | first3 = L. | last4 = Peces | first4 = C. | last5 = Murillo | first5 = C. | last6 = González | first6 = J. | last7 = Sacristán | first7 = J. | title = Reading virtual slide using web viewers: results of subjective experience with three different solutions. | journal = Diagn Pathol | volume = 3 Suppl 1 | issue = | pages = S23 | month = | year = 2008 | doi = 10.1186/1746-1596-3-S1-S23 | PMID = 18673512 | PMC = 2500104 | URL = http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2500104/ }}</ref> | |||
==See also== | ==See also== | ||
*[[Informatics]]. | *[[Informatics]]. | ||
==References== | |||
{{Reflist|1}} | |||
==External links== | |||
*[http://www.aperio.com/sites/default/files/events/042711_Tips_and_Tricks_Ole_Eichhorn.pdf Scanning tips and tricks (aperio.com)]. | |||
[[Category:Informatics]] | [[Category:Informatics]] | ||
Latest revision as of 14:12, 5 August 2013
This article deals with the Aperio slide scanner software.
Scanscope
This software used to scan the images.
One slide
- Place slide with label closest to front of slide scanner.
- Open ScanScope.
- Click Manual load or One Touch
Manual scan:
- Scan area tab: select area to be scanned (green box).
- Focus Points tab: Autoselect will usually do.
- Focus points can be added with left mouse button double clicks.
- Focus points over blue stained areas tend to do better than over light pink stained areas.
- Calibrate tab: should be boring grey.
- Scan tab: click Start Scan and it should do it.
Several slides
Getting started:
- Load cartridge - tissue toward inside of the scanner.
- Push until it clicks.
- Open ScanScope Console.
- Enter user and password.
- Goto Start tab.
- Dark gray rectangles = selected slides.
- Select slides.
- Right click - select Get snapshots.
Notes
Other:
- Find tissue - automagically draws green box around the tissue.
Preview:
- Green box = area scanned.
- Yellow boxes = focus points.
- Blue = white balance reference point.
Rack display:
- Hatched blue lines = scanning of slide in progress.
- Solid blue = slide was scanned.
ImageScope
- This software is used to view the images generated by Scanscope.
Note:
- Digital slides are stored in a central repository ( http://eh-aperio/List.php ).
Navigation:
- Most recently scanned: Digital Slides -> All Digital Slides (As List).
Aperio web server
- Used to view slides with a web browser.[1]
See also
References
- ↑ Rojo, MG.; Gallardo, AJ.; González, L.; Peces, C.; Murillo, C.; González, J.; Sacristán, J. (2008). "Reading virtual slide using web viewers: results of subjective experience with three different solutions.". Diagn Pathol 3 Suppl 1: S23. doi:10.1186/1746-1596-3-S1-S23. PMC 2500104. PMID 18673512. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2500104/.